MmuEX1028404 @ mm10
Exon Skipping
Gene
ENSMUSG00000061544 | Zfp229
Description
zinc finger protein 229 [Source:MGI Symbol;Acc:MGI:2679295]
Coordinates
chr17:21730795-21734739:+
Coord C1 exon
chr17:21730795-21731051
Coord A exon
chr17:21733795-21733958
Coord C2 exon
chr17:21734621-21734739
Length
164 bp
Sequences
Splice sites
3' ss Seq
AAAACTCGCCTTTCCCTCAGAAA
3' ss Score
6.8
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
TGCAATTGCTCGCAGCACGTACCGGCTCTCCACAAGCCCTGTTTTGTTTTTGTTTTTTGTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCGGAGTGCTGGGATTAAAGGTGTGTGCCACCACCGCCCGGCATCACCTTGAACCCATGGAGATCTGCCTGCCTCTGCCTGCTGAGTGCTGGGATTAAAG
Seq A exon
AAATTTCCGGGGACACCTAGTGCAGAATCTGGGCCAAGGACACTGCCCAGGGTCTTGCGGAGACGTGAAAACTCCCGAGAGCCGCAGGTGCCGCGCGGGGCATCCTGGTAGAGTCAGCAGCGCGGCGGCGGAAACCGCAGCCCGGCGGCCCTGGAACCTCCCAG
Seq C2 exon
GATTTGTTGATCTCCAGTGATGTGGCTGTGGACTTGTCCCAGGAAAAGAGGGAATGCCTACACTCTCTTCACGGGGCTTTTTGCATAGAGACTTCATGTTAGAATTAAAGTGGGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061544-'0-8,'0-7,1-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCTCTGTGTAGCCCTGGC
R:
GGCATTCCCTCTTTTCCTGGG
Band lengths:
243-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types