MmuEX1028405 @ mm10
Exon Skipping
Gene
ENSMUSG00000061544 | Zfp229
Description
zinc finger protein 229 [Source:MGI Symbol;Acc:MGI:2679295]
Coordinates
chr17:21743859-21769342:+
Coord C1 exon
chr17:21743859-21743957
Coord A exon
chr17:21745047-21749031
Coord C2 exon
chr17:21769293-21769342
Length
3985 bp
Sequences
Splice sites
3' ss Seq
TAATTGGGAACATTTTCCAGAGA
3' ss Score
1.62
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTATTATTGTGTGCAAGGCAGACCTGGTCCCCCATCTGGAGCAAATCTATATACCCTGGAACGTGAAGATAAAAGAGATGGTGGCTAAACCAGGTAGAG
Seq A exon
AGAGCTATCGAATGTGCAGTGAATCTGAGATTGTCTTCTATCAAGACTCGAAGAATATCATCTATGAGCATGTGGATATACAATGGAAGTCCAGTGAATGTAATGAAATTGGCAAAATGCTTCATGAATCCTCCGGAGGGTGGATACTTTGCAAAACAAATAATACTCCAGAAATCTGCAACAAATACAGATTTGATAACCACAAGGATGCATATATTGAATCAACAAACCTCAGTAGACATAAAAGTATGCACACTGAAGAAGAACCTTGCAAATATAAAGACTATGGCAAATCTTTAAGTTTGTTTTCAAATGTAAGTCAGAGTCATGGAATCTACATAGGAGAGAAAGAATATAAAGAATGCGATAAAACTTTTGGCTCTTTCCCAAAACTTGTACAGCTAAGAATCCATAGTGGAAAAAACCCACAGAAGTGTAGGAAATGTAGAACAGGATTCAGGACCTGCTCAAGCCTCAGTACGCATCAGAGAACTTATACTGGAGAGAAACCATGGATATGCACAGAATGTGACAAGGCTTTTAGGTGGTTGTCAGATCTTAAAACCCATTACAGAATCCATCCTGGAGAAAAGCCTTTCAAATGTAAGGAATGTGACAGATCTTTTACCTTCTACAATTCTCTTAGAGAACATCAGAATATCCATAAGGGAAAATTGTACAAATGTTGGAAATGTGACAAGTTCTTTACCCGGTGCTCATCTCTTAGAGCACATGAGAAAATTCATACAGGAGAGAAACCTTTCAAATGTAAGGAATGTATTAAGTCCTTTTATATGCTGTCCCAGCTTAGAAAACATGCCAGAACACATACTGGAGAGAAACCATACAAATGTAAGGAATGTGACAAATCTTTTACCTACTCCTCATCTCTTAGAGAACATCAGAACATGCATGCTGGAAAACTATATAAATGTCAGGAATGTGACAAGTGCTTTACCTGGTGCTCATCTCTTAGAGCACATGAGAAAATTCACACTGGAGAGAAACCTTTCAAATGTAAGGAATGTGGTAAGTCTTTTTGTATGTTGTCGCAACTTAGAAAACATGCCAGAACTCATACTGGAGAGAAACCGTACAAATGCAAAGAGTGTGAGAAATCCTTTACTCAGTGTTCAACCCTTAGGATACATCAGAAAATTCATGCTGGAGAGAAACCCTACAAGTGTAAAGAATGTGGTAAGTGCTTTTATAAGTTGTCATATCTTAAAGTCCATTATAGAACCCATACTGGAGAGAAGCCTTACCAATGTAAAGAATGTGGTAAGGGCTTTTCCCAGTTGTCTTGTCTTAAAAGCCATGAAAGAATCCATACTGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATCCTTCACACACTGCTCAACTTGTAGGAGACACCAGAGCACTCATGCTGCAAAGCCTTACAAATGTGAAGAATGTGACAAATCCTTTGCCAAACAGTCGTCTCTCAGAACACATCAGAAAGTTCATGCTGGAGAGAAACCTCATGCTTGTAAGGAATGTGGTAAGGCCTTCTATCAACTATCTCATCTGAAAGTTCATTACAGAATCCATACTGGAGAGAAACCGTATAAATGTGATGAATGTGAGAAATCATTTACGAAATGTTCATCTCTTAGAACACATCAGAAAATTCATGCAGGAGAGAAACCTCATGCTTGTGAAAAATGTGGCAAGGCCTTCTATCACTTATCACACCTTAACATCCATTACAGAACTCATACAGGGGAGAAACCTTACAAATGTAGTGACTGTGACAAATCCTTTACCACACTGGCAAACCTTAGAAGACATCACAGACTTCATACTGGGGAGAAAACTTTCCATAGTAAATAATGTGGTGTATGCTTTTCCGAGAATGCTGTCCTTAGGCACCACTGCAGGCTCCACTCCAGAAAAACATTATGAACATGGGAAATCTGAGAAGGCCTTTACAGAATATTTAAATCTTAGAAAACATCTAAAGTTTATAGAGAAATATTATACTATTGGAAGCTTTTCATTAAAACATTATACTTGTTCAACCTCAAAAAATTTATAATGAAGACAATGTGTTAATCTAAAGAATGTTACCAAACCTTTAGTTATTCCCTGAAATAATATTAGAGAGAAATCATATATGTTTGCCATTGTGCTATATTCATGCCTCACTGCACAGTAGAAATTCCTCTCTAGAGACCCCAAAGAAATATCATTGAATTTGGCAAAGCCTGTTCCTACTAGACTTCTGGAAATTCTTCCTGAAGGAAAACCCAAGAAAGTGCTTTAATAAAGGCACCCTTGGTTTTTTGGTTTTTTGTTTTGTTTTGTTTTTTGTTTTTGTTTTTGTTTTTGTTTTTTGCTTGTGTGTTTGTTTTTTCACCTTCAAAATACTCATTCTGGAGTAAAAACCTGTCAATCACAAGATGGTGAGAACTTAACAGTGATGATCTGTGTGCTCATGTACAGTTAGAAAATCCCCCAAGAATGTACAGGAAAATTATTTTTCAGTACTGAAGAAAGTTGACGTATTTAGTAGAACTGCAGAGCATAGTAACAGTAGAAATTTCATGTACAAATAATAAAACACAAAGGTTTGTAGGCATTAGAGAAGCCAGTGTACTACATTAGCAAATGGTTATATATAATTGGTATCAATTGCTGCTCCTTCAGAGCTGATGAACCCAAGTCAGGAGTCACGAAAGTTAGTAGGGACTGACAATAACCATCAAGGGACCTCAATTGTCTGCATAATCTTAATGCCAATTTCAAGCACTCTATGTGTCAGGGCTCCTTGGTACACAGATTCTGCACAGATCAAAGCCCATTTAATGATCTTTCAGTAGTTTTCTTCATTATCATTTAAAAACAATTCTTAGCCAGGTAGCAGTTGCACAGGCCTTTAATCCAAGCACTTGGGTCAGGGAGGATAGAGGTGGGTGGATCTCCATGGAAGCTAGCCTGGTCTACAGAGTAAGTTCCAGGACAGCCAAAGCTACACAGAAAGACCCTGTCTCAAAGACAAACAACACACACACGCATTCACAAAGGGAGAGAGTTCACAAAGGGAGAGAGAGAGAGATAGAGAGAGAGAGAGAACAATTCTTGCTACTTAAACAGAATCCTGTCTTGGAAACCCTCTACTTTGAGAAGTTACTCTTTTATTTGTAATAAATATTGATTGCAAGCAAACCTACTTCTGTTGACTACACCTGGTAGAGGCATGAAAGTACTTTTAGGGAACAGCACCATATTTGGAGAAACTGTCTTGGAGTTTTCCCATAAGCACTCAGAACTCTCCTTATATAGGTTCATTCATGGACCATGTTACAACATCTTTCCCATTTTATCTTTTGAACTCAGTATGTCTAGAATGGTTTTCACTCAAGATGTAGACAAATCTAATTGTCATTTGATGCATGACTATTCTATAAATAAGCAATTTATCAACACAATAATATTAGGCCAGTGAAAGCATTATTTGTTACGATCTGCCATCAGGTATGGGAGCCTTTCTTCTAGCAATTTAGCTACTCCATAAGTCATATCCTTGTAAGAAATAGTCAATAAGCTATCTGAAAATGTTAAAAAGTCAAAACTTCCCTTGGAAATATTATAAGTGGTATTTGATGTATTCTCACATGTAATTTTATGATTAGATTCTGTGGGGGTAATACAAAAGTAAGTGGAATTCCAATCATATTTCATAGACATTTGGTTTTTTTTTCATATTTATGATCTGATCCTGCACAATTTAACTCTTGTACTTCTGATTCTATTTGTTCATCAATGCTTATCTTACTCATAAATTATGAGAATCATGTTACTCTTTTTGTACAAACTGTTGCAATCATAATTATTCCTGTGATGGTAACAATAAGCTATTCAATAAAGCATTTTGTCCTTTTTAGAAATCTATCAAGGACTTGTATCATAGTAGCTACAACAAACCCCTCTTCCCATGGCCTGGTCAGTTACAG
Seq C2 exon
GTGCCATGTGAAGAACAATGCTGAGTTCATTTGTGGTGCTCTCCCACTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061544_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2)
C2:
NO
Main Inclusion Isoform:
ENSMUST00000183192fB19849
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types