MmuEX1028418 @ mm10
Exon Skipping
Gene
ENSMUSG00000022526 | Zfp251
Description
zinc finger protein 251 [Source:MGI Symbol;Acc:MGI:1918841]
Coordinates
chr15:76852148-76869920:-
Coord C1 exon
chr15:76869807-76869920
Coord A exon
chr15:76866242-76866347
Coord C2 exon
chr15:76852148-76854614
Length
106 bp
Sequences
Splice sites
3' ss Seq
CTCTGCTTACCTCCCAACAGGAA
3' ss Score
10.89
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GATTCCCAGGCCCTAAGCCAGAACTGATCTCCCAGCTGGAGCAAGAGGAGGAGCTGTGGGTCCTGGATCTTCTCGGGGCTGAAGAACCAGAAGTCTTGAGACGTTGCCAGACAG
Seq A exon
GAAACTAAAAGGCACGAGAGTATTCTTTCTGAGACATACCCTTATGGAGCCCAGATTAGCCTCTCCCATAGTTCCTGATTCTGACTCCTAATTGCTGGAATCTCAG
Seq C2 exon
ATTCTGAGATCGAGGCCGAGAAGGAGCTATCCATTTTAAACCAGAAATGTTTCGAAGAAGTAAAAACCCCAGAATTCATATCACCGAAATTCCCAAGGGCTTATTCACAGGCGTCTGAGCCCCAGGAAGCTTGTGCCCATGAAGGTCAGGGAGATGGGAGCCACGGAAGCTCTGCTACTCAGGGTTTGAAGAGCATTGCTAAAAAGGACGCTGCGGTCTGTAGGGAGCAGTTTCCCAAGAACGCCCAGACTTCTGTGTTTGACAAACACTTGAATCCCAGCCAAAGTGTTGTTACAGTTCAAAGAAATAAAGCAGGACAGAGAATCTTTAAATGTGACATATGCAATAAAACGTTTAAATATAATTCAGACCTAAGTCGGCACCGCAGGAGTCACACTGGGGAAAAGCCTTATGAATGCGGTCCGTGTGGGCGGGCCTTTACACACAGCTCAAATCTTATTCTTCACCAGCGAATTCACACTGGGAATAAACCATTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022526_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=1.000 C2=0.172
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8)
Main Inclusion Isoform:
ENSMUST00000080406fB19858
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTGAGACGTTGCCAGACA
R:
CAGACCGCAGCGTCCTTTTTA
Band lengths:
242-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types