MmuEX1028421 @ mm10
Exon Skipping
Gene
ENSMUSG00000063108 | Zfp26
Description
zinc finger protein 26 [Source:MGI Symbol;Acc:MGI:99173]
Coordinates
chr9:20444894-20445897:-
Coord C1 exon
chr9:20445746-20445897
Coord A exon
chr9:20445214-20445319
Coord C2 exon
chr9:20444894-20444985
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTTTTGGTTTTTCGAGACAGGGT
3' ss Score
3.36
5' ss Seq
AAGGCATGT
5' ss Score
2.03
Exon sequences
Seq C1 exon
GAATTTAAGTCATCCAGATTAAGGAGAATGAATCTCGTCATTTTCCACTTTGATGCATAAGTTTCCCTGACGTGTCCTTGGAATCGCAGAAGAATTTGGTCACATATTTTACCATCAGACTAAAGAGATGGACTTGACTAGTTTGTCCTGTG
Seq A exon
GGTTTCTCTGTGTAGCCCTGGCTGTCCAGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAG
Seq C2 exon
AAAGTCTGCTTTCTGGTGACCAGAACTGCAGTCAAGGAGAAGAGACAGAGGGAGAAAGCATGCTGGCTGATTGCCTGAAAAACTGTAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063108-'9-7,'9-6,10-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.476
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=PU(0.1=0.0)
Main Inclusion Isoform:
ENSMUST00000159569fB19861
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCATCCAGATTAAGGAGAATGA
R:
TTACAGTTTTTCAGGCAATCAGC
Band lengths:
234-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types