MmuEX1028428 @ mm10
Exon Skipping
Gene
ENSMUSG00000036916 | Zfp280c
Description
zinc finger protein 280C [Source:MGI Symbol;Acc:MGI:2387585]
Coordinates
chrX:48591673-48594504:-
Coord C1 exon
chrX:48594364-48594504
Coord A exon
chrX:48592400-48592434
Coord C2 exon
chrX:48591673-48591761
Length
35 bp
Sequences
Splice sites
3' ss Seq
ATGCCTCATTTATTTTATAGGCA
3' ss Score
9.03
5' ss Seq
GAGGTTTGC
5' ss Score
3.52
Exon sequences
Seq C1 exon
CGTTTCCTTGCTCCTCCCTTCTCGCTCTGCCTCCACCCCTTCTCCTCGCCCCTCTTTTCCCCTCCTCCTGTCCTTCCTTCTTCTCTTCCTCCCGCTGCTCCTCCTTCTCCTCTGAGCTCCGGACGTCCTGCAGCGGTCTGG
Seq A exon
GCATGTCGAAGTTCCAGAGAAAGAAAAGCAAGGAG
Seq C2 exon
GGAGGACTTTGTCTTTCTGGAGCCAGGAAGGTGATGTAATTGCTACCACCAAACCTGAGAACTTGAGCTCAATCGCAAGGACCCATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036916_MULTIEX2-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTTCTCCTCTGAGCTCC
R:
GGTCCTTGCGATTGAGCTCAA
Band lengths:
125-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types