MmuEX1028472 @ mm10
Exon Skipping
Gene
ENSMUSG00000048410 | Zfp407
Description
zinc finger protein 407 [Source:MGI Symbol;Acc:MGI:2685179]
Coordinates
chr18:84354525-84412383:-
Coord C1 exon
chr18:84412283-84412383
Coord A exon
chr18:84407723-84407793
Coord C2 exon
chr18:84354525-84354691
Length
71 bp
Sequences
Splice sites
3' ss Seq
TCCTATTATTTGTATTTCAGATG
3' ss Score
9.77
5' ss Seq
AAGGTTAGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
TACATTTGATGTCCATTTACGCTGCAATCGGCTGGGGGATGGCTGCTTCGTCATGGCTTGTGTATGAAGGCAGAAAAGCTTCATGTCCGCTTGTAAGTCAG
Seq A exon
ATGTGCTCACATTTCTGAGAAGTTAGCTTTTGCACACCAACCTACTATGATTATCTGATGCCCTCCGGAAG
Seq C2 exon
GAAATTTACATGCCACTTATGTGATAGAAGTTTCACGGAGAAATGGGCCTTGAACAACCACATGAAACTGCACACGGGAGAAAAGCCTTTTAAGTGCACCTGGCCCACGTGCCACTACTCATTCCTCACAGCATCAGCGATGAAAGACCACTACAGGACGCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048410-'15-14,'15-13,16-14
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=49.1),PF134651=zf-H2C2_2=PU(38.5=17.5)
Main Inclusion Isoform:
ENSMUST00000125763fB19893
Main Skipping Isoform:
ENSMUST00000125763fB19894
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTTACGCTGCAATCGGCTG
R:
TCTCCCGTGTGCAGTTTCATG
Band lengths:
169-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types