MmuEX1028481 @ mm10
Exon Skipping
Gene
ENSMUSG00000078994 | Zfp429
Description
zinc finger protein 429 [Source:MGI Symbol;Acc:MGI:1920057]
Coordinates
chr13:67397270-67399750:-
Coord C1 exon
chr13:67399696-67399750
Coord A exon
chr13:67397465-67397563
Coord C2 exon
chr13:67397270-67397370
Length
99 bp
Sequences
Splice sites
3' ss Seq
AGCTATTCCCTCTTCCCAAGGGT
3' ss Score
5.55
5' ss Seq
AAGGTGCTT
5' ss Score
4.72
Exon sequences
Seq C1 exon
AAAGTTGGGCGGAAATCCTATGCGGCTATCTATTCCAGTTGTCTCTGACAAGAAG
Seq A exon
GGTGCAATCACCTTGCACTTCAGACAGAAGACTCACGGGATTGCAGTTGGATCTGACATGAAGATCTGAACAGGGACGAGTTATCCATACAGATTTAAG
Seq C2 exon
CCGTAAAGATGCCACAGTGCCACTCAATATCTGACCTATGCAGAAGCTGTCCAATGGGACTTAAAGCCTCATCAATAGAAGTTACATCATGCTTAGAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078994-'0-3,'0-2,1-3
Average complexity
C1
Mappability confidence:
60%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSMUST00000181071fB19902
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGGGCGGAAATCCTATGC
R:
ATGATGTAACTTCTATTGATGAGGCT
Band lengths:
143-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types