MmuEX1028536 @ mm10
Exon Skipping
Gene
ENSMUSG00000078796 | Zfp541
Description
zinc finger protein 541 [Source:MGI Symbol;Acc:MGI:3647699]
Coordinates
chr7:16062895-16072248:+
Coord C1 exon
chr7:16062895-16063044
Coord A exon
chr7:16068815-16068928
Coord C2 exon
chr7:16071845-16072248
Length
114 bp
Sequences
Splice sites
3' ss Seq
AAAGCTTCTGTTGGTCTTAGGTT
3' ss Score
7.47
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GGCAAAAGATATTGGATGAGTTTTCAAAAATGACCACCTCACCCTTCCAGGAGGAGATAGTGAAGGCCTGATTACCACCTGAAACCCCTTCACAGTGGGGCCTAAGCCAGGCCCTCCTGTTTCCTGGAGAGTCACTCACTTGCTTTTCTG
Seq A exon
GTTACTCCTGTGAAAGAGTTGTTCAACCATCAATAAAGGAGTTCAGTATCTACAATAAATAACCCCAAACCACCAAACCAAAACAACCAGTGTTTGCAGCTGACCCCTGTCCAG
Seq C2 exon
GAGCTAGCTGCCAGCGAGGGCTCTTCCCTTCCTGACTCTGGACACGGCTTTGCTTGTCTGGAGACGGGCTCTAGCCAGGACCTGGCAGTGGAAAGCCATGGAGCCATACAGTCTTGGGGAAGAGGGAGCACTTCCATCAGAAGGGCACCTCCCATCCTTCTCTGAAAGTCAAGTGCTCAACTGCAGTGACACACTCAACCGGGACCTGGGCCCCAGCACACGGGACCTGCTCTACGCTGGCTTAAGCGGTTTGGACCTTGACCCCAGTCTCTCCACATCTGATATGCCCAGTGAAGTGCTAGAGGACAATCTGGACACCCTGTCCCTATACTCGGGGAAGGACAGTGACTCTGTGAAGCTGCTGGAAGAATATGCAGACTCTGAGTCACAGACCTCCTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078796_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.631
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGACCACCTCACCCTTCCA
R:
CTCCCTCTTCCCCAAGACTGT
Band lengths:
250-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types