MmuEX1028539 @ mm10
Exon Skipping
Gene
ENSMUSG00000074221 | Zfp568
Description
zinc finger protein 568 [Source:MGI Symbol;Acc:MGI:2142347]
Coordinates
chr7:30017167-30025111:+
Coord C1 exon
chr7:30017167-30017262
Coord A exon
chr7:30018170-30018479
Coord C2 exon
chr7:30022218-30025111
Length
310 bp
Sequences
Splice sites
3' ss Seq
TGGATCATTGCCATTAAAAGGTT
3' ss Score
3.52
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTCTTGCTGATACTAAGCCACGGGTGGTCTCCCTTCTAGAACAGGGCAAAGAGCCCTGGATGGTTATGAGGAATGAGACAAAAATTTGGCATCCTG
Seq A exon
GTTTTAGAATTCTTGTGTAAAAGCACACATCAGAAGAAAACTATGAATAATACTGGCCTTTGAACTAGCTGAGAAATGCTCCTGCCTTTTCTGACTTCTGAGAACATATATTAAAAAAAGAAGAAGAAGAAGAAGAATTTGTGTTAAAAGCTGAGAGGGACCTCAAGTCCTCACAAGAATGAGAGCTCACAAAAATGCCAGGCATGGTGATATGTGCAATATATTCCTGGCCTGGGGGAGACAGACAAGAGGCTTGCTGGGGCTCACTAGCAGCCAGAGCTGCAGGCTACTGAGAGACTGTCTCAAGGAG
Seq C2 exon
ATTGGGTGTCTAGGACAGAAGCCAAGGACAGTTCCAAAATTAAAACATTGCAAGAAAAGATGGCAAAAAAACACACATGCCCCACTCTTGAGGACAGCAAGACCAGAGGGGACAGAGAAGTCACACGTGAGCTGGAGGGTCAACAGGTCCATCAGGAGGGACACTTGAGGCAAGCTGCAGTAACCTCTGTCGAGAGGCCTGATTCTGTCCAGTGCACAGCCCATAGGGAGGCTCACCCTGGAGGAAAACCCTGCAGCTCTGAGAAAAGTCAGAAAACGTCCCTGTGCCAGCCACCTCCCATTGAACGTGAGCAACTTCACAGTAAGGCAAAGGCCAGTGAGCATGCACAGCATGGCAAGGTCTTTAATAGCTGCACGTCAGACACGGCTGTGCATCCGAGACCCCAGGAAAGCAGAAAAGACAGTGAGAGGAAGAAAAGTGCCCTTGCTGGTGGTCCTGACACCTCGAAACCTCAGAGCGCTCAGGGGAGTGAGAGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074221-'20-22,'20-21,21-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.452
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5)
Main Inclusion Isoform:
ENSMUST00000148442fB19943
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATACTAAGCCACGGGTG
R:
CAGAGCTGCAGGGTTTTCCTC
Band lengths:
352-662
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types