MmuEX1028558 @ mm10
Exon Skipping
Gene
ENSMUSG00000020420 | Zfp607a
Description
zinc finger protein 607A [Source:MGI Symbol;Acc:MGI:3584526]
Coordinates
chr7:27877766-27901022:+
Coord C1 exon
chr7:27877766-27879439
Coord A exon
chr7:27879513-27879590
Coord C2 exon
chr7:27900887-27901022
Length
78 bp
Sequences
Splice sites
3' ss Seq
CAGTTTCTTGCTCATTTTAGAAC
3' ss Score
7.46
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
GAGACCTTTTGAGTGCAAAGAATGTGGAAAGGCTTTTCATCTTCCCAGTCAGCTTACTTACCATAAAACTGTCCATACAAATCAAAAACCATTTGCTTGTGAAGAATGTGGGAAGTCCTTCAAGCATGTCTCCAGCCTTATTGAACATAGGGTTATCCATGCCGGTTTGAAACCATATGAATGTGGTGAGTGTGGGAAAGCTTTTAATCATCGCTCAAACCTCAAGCAACATCAGAAAATTCATTCTGATGAGAGACCCTTTGAGTGTAAGGACTGTGGGAAGGGCTTCACTGTTCTGGCTCAGCTTACTCGGCACCAGAGCATTCACACTGGAGAAAAATCATTTGAATGTGAGCAGTGTGGGTCCAGTTTCCGACTTAAGTCCCAACTCAATCAACATCAGAGAATCCATACTGATGTGAAACCCTATCAGTGCAAGGAATGTGGAAAGGGCTTTGTTCGTGGTACAGCCCTCAGGATTCATCAGAGAATCCACACTG
Seq A exon
AACTCACACTGGCAAGAAGCCTTCTGAATGTGAAGAATTGTGGCGGAGACCTTAAAGTACATCAAAGAATTCATGCTG
Seq C2 exon
CTACTTGGAAGCCTCATCTATGGAGCGAGACCCTTTCATAAAGCTACAACGTACAGCCTCAACTGTTTCATTGTAGTAACAGAGAAAAGCCAATACAGCTGTCTTCTAAATATAGGACCTCATCTTTCTTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020420_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.3),PF0009621=zf-C2H2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3)
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGTGTGGGTCCAGTTTC
R:
CGCTCCATAGATGAGGCTTCC
Band lengths:
175-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types