MmuEX1028605 @ mm10
Exon Skipping
Gene
ENSMUSG00000079215 | Zfp664
Description
zinc finger protein 664 [Source:MGI Symbol;Acc:MGI:2442505]
Coordinates
chr5:124885387-124902693:+
Coord C1 exon
chr5:124885387-124885895
Coord A exon
chr5:124887133-124887225
Coord C2 exon
chr5:124901262-124902693
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTTTCGGGCTCCTTTTTTAGGTG
3' ss Score
11.57
5' ss Seq
TGTGTAGGT
5' ss Score
1.48
Exon sequences
Seq C1 exon
GAGGCTAACAGGTAGCTTGCCCAATAGAGCAAGCCTGAGATAGACTGTCAAGATGGCGAAATAAGAGGCTTTATGAAGTAGCAGTCCTGGAACTCTTGGTTGTAAGGACACTTTCTTCTTTAAGTCACGATACCAAATAGGAAAAAAAATGATCTACAAGTGCCCCATGTGCAGGGAATTTTTCTCTGAGAGAGCAGATCTTTTTATGCATCAGAAAATCCATACAGCAGAGAAACCCCATAAATGTGACAAATGTGATAAGGGTTTCTTTCACATATCAGAGCTTCATATTCATTGGCGAGACCACACAGGAGAGAAGGTGTATAAATGTGACGATTGCGGTAAGGATTTTAGCACGACGACCAAACTTAATAGACACAAGAAAATCCACACTGTGGAAAAGCCCTATAAATGCTATGAGTGTGGCAAAGCCTTCAACTGGAGCTCCCACCTTCAAATCCACATGAGAGTCCACACTGGGGAGAAGCCGTACGTCTGCA
Seq A exon
GTGGTGGGATTGAGTCCCTACTAGCTCGGAAGGCCTTGAGAGGGCTGATGGGGAAGTCACTGAGGATGAATCTGTCATCTCAGGCAATAATGT
Seq C2 exon
GCACTCTCAGGTGCATACGGAGGCCAGAAGAGGGCGTCAGATCCCCCGGGCCTGGAGTTACAGACGACTGACTGTGGACTGCCAATACAGGGTGGGGTGACGGGGTGGGAGCTGGAGGAAGGTCCTCTTCAAGAGCAGCAAACGCTCTAAACCACGGTGCTGAGGACTCCTCTTCCCCACCTAAACAGCCTTGAAACGAAGCAGCAGCGGGCAAAGCGTGACTCAGAAAAAATAAAGAAGTAGCAGGTAAATGACTTCAGCAAGCCTTTGTTCCCACCTTTGCTGAACGGAATGGTGTTCAGCACCTAAAATAGATTTCCAGAATAAACAAACCGAGGGCAGACTTTCAGCCTGTTAGTTAATAGACTGATTTACATAAGTCCACAGTGGCCGACAGAAGCGTGCTCTCCCTAGTCTATTAAGTTTGAGGTGAAATGTTTCCTTGAAACAAACAAACAAACAAAAACAAAAGCCTTTTCACTAACGAAGGGCAATCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079215_MULTIEX1-5/5=4-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGAGTCCACACTGGGGAG
R:
TGCTGCTCTTGAAGAGGACCT
Band lengths:
177-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types