MmuEX1028680 @ mm10
Exon Skipping
Gene
ENSMUSG00000096916 | Zfp850
Description
zinc finger protein 850 [Source:MGI Symbol;Acc:MGI:3036281]
Coordinates
chr7:28005219-28007440:-
Coord C1 exon
chr7:28007314-28007440
Coord A exon
chr7:28005467-28005626
Coord C2 exon
chr7:28005219-28005317
Length
160 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTTTTAGAGA
3' ss Score
11.15
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GGGTCAGTGACATTTAGGGATGTGGCTGTTGACTTCTCTCAGGAAGAGTGGGCCTGCCTGGATGCTACTCAGAAGGTCTTATACAGGGACATAATGTTGGAGACCTACAGCAACCTCATTGCAGTGG
Seq A exon
AGACAAGGATCTTGCATTGCAGCCCAGAGGGCCTGGCTCATTCCCCCACCTACTGTATAGACTTTTATAATAAGTCTGTATTTTAAAAATCTGGACAGGCAGAGCATGGTGGCACACAGCTTTTGTCTCAGCATTTGGGAGGCAGATGCAGGCAGATCAA
Seq C2 exon
TGGGAAGTTGCATTTCCAAGCCAGATCTGATCGTCTTACTAGAGCAGGAGAAAGAGCTCTGGATGGCTGTGAAGGAAGAAACAGACAGGTTGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000096916-'10-9,'10-8,11-9
Average complexity
S
Mappability confidence:
88%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.059
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
ENSMUST00000180502fB20027
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCAGTGACATTTAGGGATGT
R:
CTGGGCTCAACCTGTCTGTTT
Band lengths:
226-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types