MmuEX1028684 @ mm10
Exon Skipping
Gene
ENSMUSG00000054519 | Zfp867
Description
zinc finger protein 867 [Source:MGI Symbol;Acc:MGI:2681848]
Coordinates
chr11:59465451-59472474:-
Coord C1 exon
chr11:59472341-59472474
Coord A exon
chr11:59466168-59466328
Coord C2 exon
chr11:59465451-59465577
Length
161 bp
Sequences
Splice sites
3' ss Seq
CAAAGTTTTTTTTTTGACAGTTT
3' ss Score
5.73
5' ss Seq
CAGGTGCTG
5' ss Score
4.87
Exon sequences
Seq C1 exon
GTTTAGTTCTTGTTCAGGTTCCGTTTCTTCAGGTTCTATGTCTGGCTCACAGTTGTGTATGGTGGCTCCGCTGTAGCTAGCGTCCTTATGAGGTGCAGACGACGACGATGCGGGACAGCAGAAATTCGGAAATG
Seq A exon
TTTTACTTTACTCATGTTTCTGTGGAGGGCCGTGTGTTTGGAGCAGCCCAAAGCCACTTTGCTGACCTCATTTTCCCTGACTCTGTGAATGTTCCTGGACTGATGCAGTTTGTGCCATCGCTTTACTGTGTTCCCTCCATCGCTGTTGCAGTAAGAGGCAG
Seq C2 exon
AACTCAGTGGCCTTTGACGATGTGGCTATAAACTTCACCCAGGAAGAGTGGGCTTTACTGGATCCCTCCCAGAAGAATCTCTACAGAGATGTGATGGAGGAAGTATTTAGGAACCTGACTTCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054519_MULTIEX1-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.278 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENSMUST00000057799fB20029
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAGGTTCCGTTTCTTCAGGT
R:
AGTCAGGTTCCTAAATACTTCCTCCA
Band lengths:
243-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types