MmuEX1028687 @ mm10
Exon Skipping
Gene
ENSMUSG00000067916 | Zfp991
Description
zinc finger protein 991 [Source:MGI Symbol;Acc:MGI:3701604]
Coordinates
chr4:147132038-147165386:+
Coord C1 exon
chr4:147132038-147132360
Coord A exon
chr4:147140038-147140119
Coord C2 exon
chr4:147165341-147165386
Length
82 bp
Sequences
Splice sites
3' ss Seq
CCCTGTTGTGAAACTTCAAGAAG
3' ss Score
0.46
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
CATCTTTCTTCTTGCATCTCGGCTGCCTCGTGATCAGGAAGTCATGGAGGGAGACTAGTGCCTAGTATTTGCGGTGCCTGAAAACTTTCTTAAGAAGCAGTTGTTTTGCTGGCCTCCTAGGACATCCAGGAGCTGGTCCTGTCATCTTCCAGGTTAGAGGAGCTGTTGGACTAGGAACCCGGCAGGAGCTGGGCAGCGGTGTGGAGCAGGGGTGCCTTTTCTGCCGCCATTCTCACAATTCAGTATTTGCGGAACCTGAAAACTTCCTTAAGCTGCCGTTGCTCCTCCTAGGACATTCAGCAGCTGATCCTGTCACCTTCTAG
Seq A exon
AAGAGTTCCAATATTTGAAAATGGAAAAAAAAAGAAAAAAAAGAAAAAAAAAAGAATGAGTTCTTCTCTGGTAAAATTCCAG
Seq C2 exon
GTGGAAGAAGGGGAAATGCAAACTTGGTGTTCTGAGACTCCCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000067916_MULTIEX1-2/5=C1-3
Average complexity
C3*
Mappability confidence:
75%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTAGGAACCCGGCAGGAG
R:
ACCAAGTTTGCATTTCCCCTTCT
Band lengths:
183-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types