MmuEX1028695 @ mm10
Exon Skipping
Gene
ENSMUSG00000066613 | Zfp932
Description
zinc finger protein 932 [Source:MGI Symbol;Acc:MGI:1916754]
Coordinates
chr5:110003353-110007070:+
Coord C1 exon
chr5:110003353-110003452
Coord A exon
chr5:110005964-110006035
Coord C2 exon
chr5:110006944-110007070
Length
72 bp
Sequences
Splice sites
3' ss Seq
GATAATTTTCTGTTTCTCAGGAT
3' ss Score
8.55
5' ss Seq
CAGGTGTAT
5' ss Score
3.09
Exon sequences
Seq C1 exon
GCTGCCTCTATGTCCATCTGACCGGGTTTTTGCCACTTCTAATCTACTTTCTGCTACTGGCAAAGAGGAGTAATAGAGTATACAGGATAAGTATTGCCCT
Seq A exon
GATGGCGTGTATTCATGACATTGATACTGCCTGAGCTTTACTGCCTGAGCTTTCTGAGTCATTGGATTGCAG
Seq C2 exon
GATGCATTGACCTATGATGATGTGTATGTGAACTTCACTCAAGAAGAATGGGCTTTGCTGAATCCTTCACAGAAGAGTCTCTACAAAGATGTGATGTTGGAGACCTACAGGAACCTCAATGCTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066613_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCTATGTCCATCTGACCG
R:
GTGAAGGATTCAGCAAAGCCC
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types