MmuEX1028751 @ mm10
Exon Skipping
Gene
ENSMUSG00000078546 | Zfp995
Description
zinc finger protein 995 [Source:MGI Symbol;Acc:MGI:1917331]
Coordinates
chr17:21887311-21908196:-
Coord C1 exon
chr17:21908049-21908196
Coord A exon
chr17:21892581-21892822
Coord C2 exon
chr17:21887311-21887358
Length
242 bp
Sequences
Splice sites
3' ss Seq
AATGTTGTTTATTATTAAAGATG
3' ss Score
3.72
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GCATCATTCATTTTTGTTCCATGAAAAGTTCTGGGTGCTTTCTGAAGACTCTTTCCCATGTGCAAGTGTCTCACTCCTCAGGTAGTTCAGCTTACCTGTGAAACTGAGAGCCCTGGATGGTGAAGAGAGGAAACTAGCAAAGATCCAG
Seq A exon
ATGTGTAACATGGAGATTCCAGACAGAAGATTGATTTCAGAATGAATCACAAAATATGAGCCAACTATGATGAGTACTGCTCACATACGAGCTGTCACATGTTCTTGACTGTCAGATATCGTACATCAGCATCTGTCATTTCATTATGTTTCTTGTAAAAGAAAAATGTAGGTTGATATTGAGCAAATGTGGAGACAAATGCATTAAACAGGAGAAAGAATTTCACATCTGTGATTGGAAGG
Seq C2 exon
GTGAGAGTAACAAAAAGAATGAATGCTTCTCTCATAAATGCTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078546_MULTIEX1-4/5=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCATTCATTTTTGTTCCATGA
R:
CTGAGGAGCATTTATGAGAGAAGCA
Band lengths:
196-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types