MmuEX1028759 @ mm10
Exon Skipping
Gene
ENSMUSG00000079509 | Zfx
Description
zinc finger protein X-linked [Source:MGI Symbol;Acc:MGI:99211]
Coordinates
chrX:94102291-94123702:-
Coord C1 exon
chrX:94123605-94123702
Coord A exon
chrX:94114166-94114263
Coord C2 exon
chrX:94102291-94102380
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTCTCTCTCTACAGGTG
3' ss Score
15.51
5' ss Seq
AAGGTAGAC
5' ss Score
7.07
Exon sequences
Seq C1 exon
ACACACCGCACACACACACATTTACGGCGGGAGGGGGGTCTGCGGGCCTGCAAACAACTCGAGCCACCGCCTCAGGCCGGGACCCTCGCGGAGAGGCG
Seq A exon
GTGCGTATAACTGTGCCCAGCTAACCTTGTAAGATGAATTGGGGAGCATCCCCTCTTTTTTGAAACAGGTCTGTTGCATAGAGTCTGATCATTGAAAG
Seq C2 exon
GTGTTCTGGCTGATGAGAATTTAAAGGCCATGGATGAAGATGGACTTGAATTACAACAACAAGCACCAAACTCATTTTTTGATGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079509_MULTIEX1-1/3=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=83%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.833
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCACACACACACATTTACG
R:
TGAGTTTGGTGCTTGTTGTTGT
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types