MmuEX1028763 @ mm10
Exon Skipping
Gene
ENSMUSG00000053211 | Zfy1
Description
zinc finger protein 1, Y-linked [Source:MGI Symbol;Acc:MGI:99212]
Coordinates
chrY:759850-797176:-
Coord C1 exon
chrY:797111-797176
Coord A exon
chrY:768497-768542
Coord C2 exon
chrY:759850-759937
Length
46 bp
Sequences
Splice sites
3' ss Seq
GTCTTTTATCTTATTTTTAGATT
3' ss Score
10.15
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
AGACCGGCCCAGTACTCTGAAGTCTGCAGTACTTGTCGTCATTGCCTACCCCTCTACACTGGTCTG
Seq A exon
ATTATCTGAATAATGTTATAATATGTTCCTGACATCATTCTGTTCT
Seq C2 exon
GAGCTGACTTAGTAAGAACTGAAGGCCATGGATGAAGATGAAATTGAATTGACCCCAGAAGAAGAAAAGTCATTCTTTGATGGAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053211_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.667
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCCCAGTACTCTGAAGTCT
R:
TGACTTTTCTTCTTCTGGGGTCA
Band lengths:
134-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types