MmuEX1028787 @ mm10
Exon Skipping
Gene
ENSMUSG00000002266 | Zim1
Description
zinc finger, imprinted 1 [Source:MGI Symbol;Acc:MGI:1341879]
Coordinates
chr7:6682740-6687775:-
Coord C1 exon
chr7:6687684-6687775
Coord A exon
chr7:6684196-6684323
Coord C2 exon
chr7:6682740-6682866
Length
128 bp
Sequences
Splice sites
3' ss Seq
TGTGTTCTTTCCTCTTAAAGCTG
3' ss Score
10.4
5' ss Seq
AAGGTCTCC
5' ss Score
0.87
Exon sequences
Seq C1 exon
CCTCACCTTCACCAAGTCCTGATCAGACAGCAAACCAGCTCTCTGAAAAGAAGCGAAGAATTCCGATCACGTCGTTGCCAACCTGGTACAAG
Seq A exon
CTGTTTTCCTTTGCTGCTCACCCACTGAGGGACCTGCTCTGTTCTGCTCTGCTCTGCTCTGCTCTCCTCTGCCTCCTCCTCGCCACTGGAGCTCCAACTGTTGTCTACTCTTTCAAGCACGTGGAAAG
Seq C2 exon
GAACCAGTGATCTTCAAAGATGTAGCTGTGTACTTCAGCCAGAAAGAGTGGCAGCTACTGGAGCCTGCTCAGAAGGACCTGTACAAGGATGTGATGCTGGAGAACTACGAGAACCTGATCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002266-'6-11,'6-10,7-11
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.574 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENSMUST00000002336fB20092
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCACCTTCACCAAGTCCTG
R:
CCACAGAGATCAGGTTCTCGT
Band lengths:
219-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types