MmuEX1029249 @ mm10
Exon Skipping
Gene
ENSMUSG00000057003 | Myh4
Description
myosin, heavy polypeptide 4, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339713]
Coordinates
chr11:67242261-67243083:+
Coord C1 exon
chr11:67242261-67242375
Coord A exon
chr11:67242785-67242877
Coord C2 exon
chr11:67243020-67243083
Length
93 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTCATTTTTCTTAAGGGG
3' ss Score
8.12
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
TGGAGAATCCGGGGCCGGGAAGACTGTGAACACGAAGCGTGTCATCCAGTACTTTGCAACAATTGCAGTCACTGGGGACAAGAAGAAGGAGGAGGCGACTTCTGGCAAAATGCAG
Seq A exon
GGGACCCTTGAAGATCAAATTATCAGTGCCAACCCCCTGCTGGAGGCCTTCGGCAACGCCAAGACTGTGAGGAACGACAACTCTTCTCGATTT
Seq C2 exon
GGTAAATTCATCAGAATCCATTTCGGTGCCACAGGCAAACTGGCCTCTGCAGATATTGAAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057003-'12-8,'12-7,13-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=0.032 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.6=100)
A:
PF0006316=Myosin_head=FE(4.4=100)
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCGGGAAGACTGTGAAC
R:
AGGTTTCAATATCTGCAGAGGCC
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types