MmuEX1029367 @ mm10
Exon Skipping
Gene
ENSMUSG00000095325 | Zfp870
Description
zinc finger protein 870 [Source:MGI Symbol;Acc:MGI:3029586]
Coordinates
chr17:32885957-32892214:-
Coord C1 exon
chr17:32891441-32892214
Coord A exon
chr17:32890294-32890411
Coord C2 exon
chr17:32885957-32886083
Length
118 bp
Sequences
Splice sites
3' ss Seq
TATTGGATGGTGACTTTCAGGTG
3' ss Score
5.19
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TGACCAGAGTCTGGAATTCTCTTGCTCTGACCCCATTCTTAGGAGGAAGAATTAGGAACGGCTCACTGTGAATTGTTACAAGCAAGAGAACAAACTTCGCTTGCATGCACACAGTCACCCAGACAGGGCTAGAACGCAGGGGTCTAGAGTGAAATCTGCTTGCTAATTTGCCTAATAAAACTTGTATGCCCTGTCACTAGCGCTCCAGGACCTGAGCCAAGGGCTCGCTGGCCTATCCGGAGAAAGGTTAGGCTCGCTGGCCTATCAGGGTAAAGGTTATTACTTTAGTGTCTGAAGTGTCCAATGAGAAGTACGCTTCTTGCATGAGGGGCTTTGTCTGACCGAGGTCTGTTTCCTTAAACCCCCTCCCCAGCCCCCCAAATTAGGCATGTTTGTGTTATTTGGAAGTATGTCCTAGATGCCAGGCCTAGATATCAGAGTCGCCTTCACTGACAGCAGGAGCCGCAGGAGCACACCAGGACACTCCGGGGCTGGAAATG
Seq A exon
GTGGGCTGAATATTTTGCCACGAAGAAACTGCTGTGGTGAGGGACATGGTGATCCAGGAGTTGACAATTTTGCTGGCTTTTGACAGCTGACCCTGCCACTCTCTGGTTTTAGTCTCAG
Seq C2 exon
GAGTCAGTGAGCTTTGAGGATGTGGCTGTGAAGTTCACGCAGGAGGAGTGGGCTGTGCTGGATCCATCCCAGAAGAAGCTGTACAAAGATGTGATGCAGGAAACCCTGAAGAACCTGGCTTCCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000095325_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTACGCTTCTTGCATGAGGG
R:
CACTCCTCCTGCGTGAACTTC
Band lengths:
242-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types