MmuEX6001711 @ mm9
Exon Skipping
Gene
ENSMUSG00000024598 | Fbn2
Description
fibrillin 2 [Source:MGI Symbol;Acc:MGI:95490]
Coordinates
chr18:58214480-58216010:-
Coord C1 exon
chr18:58215849-58216010
Coord A exon
chr18:58215068-58215136
Coord C2 exon
chr18:58214480-58214605
Length
69 bp
Sequences
Splice sites
3' ss Seq
TGCTTTCCATTGTTTTGCAGCTG
3' ss Score
10.63
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ACAACCGCGTGGGCAACTGTTACCTGAAGTTTGGTCCTCGAGGAGACGGGAGTCTGTCCTGCAACACAGAGGTCGGCGTAGGTGTCAGTCGCTCCTCCTGCTGCTGCTCCCTGGGGAAGGCCTGGGGAAACCCCTGTGAGACATGCCCTCCTGTAAACAGCA
Seq A exon
CTGAGTATTATACCCTGTGTCCTGGAGGCGAAGGCTTTAGACCCAACCCCATCACAATCATCTTAGAAG
Seq C2 exon
ACATTGATGAATGTCAGGAGTTACCAGGGCTCTGCCAGGGTGGAAACTGTATCAACACTTTTGGGAGTTTCCAGTGTGAGTGCCCACAGGGTTACTACCTCAGTGAGGAAACCCGCATCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024598-'37-38,'37-37,38-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(85.7=65.5)
A:
PF0068312=TB=PD(11.9=20.8),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTGGTCCTCGAGGAGACG
R:
AGAGCCCTGGTAACTCCTGAC
Band lengths:
168-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: