MmuEX6001890 @ mm9
Exon Skipping
Gene
ENSMUSG00000024575 | Pde6a
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:MGI Symbol;Acc:MGI:97524]
Coordinates
chr18:61422070-61423927:+
Coord C1 exon
chr18:61422070-61422179
Coord A exon
chr18:61423577-61423664
Coord C2 exon
chr18:61423827-61423927
Length
88 bp
Sequences
Splice sites
3' ss Seq
TGTCTGTCTGTCTCATTTAGATC
3' ss Score
11.12
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
ACAGGAAAGCTGAAACGGTACTTCACTGATCTAGAGGCCTTGGCCATGGTCACTGCTGCCTTCTGTCATGACATCGACCACAGAGGCACGAACAACCTCTACCAGATGAA
Seq A exon
ATCACAGAACCCCCTGGCCAAGCTCCATGGGTCCTCCATCTTGGAAAGGCATCATTTGGAGTTTGGCAAAACACTCCTGAGAGATGAG
Seq C2 exon
AGCCTGAATATCTTCCAGAACCTGAATCGCCGGCAGCATGAGCACGCGATCCACATGATGGACATCGCGATCATTGCCACAGACCTTGCCTTGTATTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024575-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(14.5=100)
A:
PF0023314=PDEase_I=FE(11.6=100)
C2:
PF0023314=PDEase_I=FE(13.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCTAGAGGCCTTGGCCAT
R:
GGCAAGGTCTGTGGCAATGAT
Band lengths:
174-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: