MmuEX6002791 @ mm9
Exon Skipping
Gene
ENSMUSG00000029661 | Col1a2
Description
collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
Coordinates
chr6:4472956-4474170:+
Coord C1 exon
chr6:4472956-4473054
Coord A exon
chr6:4473594-4473647
Coord C2 exon
chr6:4474117-4474170
Length
54 bp
Sequences
Splice sites
3' ss Seq
TGTACCTATTATTTTTATAGGGT
3' ss Score
8.42
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
Exon sequences
Seq C1 exon
GGTCTCCCTGGCATTGATGGCAGACCTGGCCCAATCGGCCCAGCTGGACCAAGAGGTGAAGCTGGCAACATCGGATTCCCTGGACCCAAAGGCCCCTCT
Seq A exon
GGTGATCCTGGCAAACCTGGTGAGAGAGGACACCCCGGTCTTGCTGGTGCTCGG
Seq C2 exon
GGAGCTCCAGGACCCGATGGCAACAATGGAGCTCAGGGCCCCCCTGGACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029661-'30-32,'30-31,31-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(7.1=18.2),PF0139113=Collagen=FE(46.4=100),PF0139113=Collagen=PU(8.9=24.2)
A:
PF0139113=Collagen=FE(27.9=100),PF0139113=Collagen=PU(6.1=22.2)
C2:
PF0139113=Collagen=PD(14.8=50.0),PF0139113=Collagen=FE(25.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTCCCTGGCATTGATGG
R:
CCTGAGCTCCATTGTTGCCAT
Band lengths:
136-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: