MmuEX6002797 @ mm9
Exon Skipping
Gene
ENSMUSG00000029661 | Col1a2
Description
collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
Coordinates
chr6:4470038-4470649:+
Coord C1 exon
chr6:4470038-4470082
Coord A exon
chr6:4470171-4470269
Coord C2 exon
chr6:4470596-4470649
Length
99 bp
Sequences
Splice sites
3' ss Seq
GACCTTTTTTCTTCCCACAGGGA
3' ss Score
12.13
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
Exon sequences
Seq C1 exon
GGCAACCCTGGAACAAATGGGCTCACTGGCGCCAAGGGTGCTACT
Seq A exon
GGACTCCCTGGTGTCGCTGGGGCTCCCGGTCTCCCTGGCCCCCGTGGTATTCCTGGCCCCGCTGGTGCTGCTGGTGCTACAGGTGCCAGAGGACTTGTT
Seq C2 exon
GGTGAGCCTGGTCCTGCTGGCTCCAAAGGAGAATCCGGTAACAAGGGTGAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029661-'23-24,'23-23,24-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(16.3=100),PF0139113=Collagen=FE(14.1=100)
A:
PF0139113=Collagen=PD(15.1=39.4),PF0139113=Collagen=FE(32.3=100)
C2:
PF0139113=Collagen=FE(17.2=100),PF0139113=Collagen=PU(15.3=61.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCCTGGAACAAATGGGCT
R:
GCTCACCCTTGTTACCGGATT
Band lengths:
95-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: