MmuEX6002801 @ mm9
Exon Skipping
Gene
ENSMUSG00000029661 | Col1a2
Description
collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
Coordinates
chr6:4468791-4469345:+
Coord C1 exon
chr6:4468791-4468844
Coord A exon
chr6:4468948-4468992
Coord C2 exon
chr6:4469292-4469345
Length
45 bp
Sequences
Splice sites
3' ss Seq
CGTCTTCCCTTCCTTCATAGGGT
3' ss Score
11.38
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGAGCCCGAGGGCTTCCTGGTGAGAGAGGGCGTGTCGGAGCTCCTGGTCCAGCT
Seq A exon
GGTGCCCGAGGCAGTGATGGAAGCGTTGGCCCCGTCGGCCCTGCT
Seq C2 exon
GGTCCCATTGGGTCTGCTGGACCCCCTGGTTTCCCAGGTGCTCCTGGTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029661-'18-20,'18-19,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(21.0=100)
A:
PF0139113=Collagen=FE(17.3=100),PF0139113=Collagen=PU(5.8=33.3)
C2:
PF0139113=Collagen=FE(21.0=100),PF0139113=Collagen=FE(19.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGCTTCCTGGTGAGAGAG
R:
CTTGGGACCAGGAGCACC
Band lengths:
101-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: