MmuEX6003379 @ mm10
Exon Skipping
Gene
ENSMUSG00000059022 | Kcp
Description
kielin/chordin-like protein [Source:MGI Symbol;Acc:MGI:2141640]
Coordinates
chr6:29490066-29492470:-
Coord C1 exon
chr6:29492385-29492470
Coord A exon
chr6:29492055-29492145
Coord C2 exon
chr6:29490066-29490148
Length
91 bp
Sequences
Splice sites
3' ss Seq
CAGTGTGATCTCTCCCCCAGGAA
3' ss Score
9.35
5' ss Seq
GCAGTGAGC
5' ss Score
3.29
Exon sequences
Seq C1 exon
GATGCCTGTACCATGGGATCACTGCTGCCCTTGGAGAGACCCTTCCTGACCCCCTTGACCCCACCTGCTCCCTCTGCACCTGTGAG
Seq A exon
GAAGGTTCTATGCGCTGCCAAAAGAAGCCATGCCCTCCGGCTCCCTGCGCTCACCCGTCTCCAGGCCCCTGCTTCTGCCCTGTTTGTCGCA
Seq C2 exon
GCTGTGAGCATGGGGGCAGGAAGTATGAGCCTGGGGAGAGCTTCCAGCCTGGGGCAGACCCGTGTGAAGTGTGCATCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059022_MULTIEX1-17/30=16-21
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(47.4=93.1)
A:
PF0009313=VWC=PD(49.1=90.3)
C2:
PF0009313=VWC=PU(39.4=92.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGTACCATGGGATCACT
R:
GATGCACACTTCACACGGGTC
Band lengths:
161-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types