MmuEX6003717 @ mm10
Exon Skipping
Gene
ENSMUSG00000038665 | Dgki
Description
diacylglycerol kinase, iota [Source:MGI Symbol;Acc:MGI:2443430]
Coordinates
chr6:37149549-37299974:-
Coord C1 exon
chr6:37299563-37299974
Coord A exon
chr6:37296673-37296747
Coord C2 exon
chr6:37149549-37149657
Length
75 bp
Sequences
Splice sites
3' ss Seq
GAATTTTTCTTTTCTTTCAGAAT
3' ss Score
10.36
5' ss Seq
CTGGCACTT
5' ss Score
-3.02
Exon sequences
Seq C1 exon
AATGCCCCGGTGCGGTGCAGCCGCGGATGGATGCTGCGGGAAGGGGCTGCCATTTGCTGCCCCTGCCAGCGGCGCGCGGACCTGCCCGCGCTCCCGCCGCCTCCAGCGCCCTCAGCCCGACCGGCCTCTGCAGCGGCACCACCTCGGCTTCTTTCGCGGCCGCCGGAGCGGTCGCCATGAACCCCAGCTCCTCGGCGGGAGAGGAGAGAGGGGCGACGGGTGGCAGCAGCAGCAGCGGAAGCGGCGCCGGGAGCTGCTGCCTGGGCGCCGAGGGCGGCGCGGACCCGCGGGGTGCAGGGGCAGCGGCTGCTGCTGCCTTGGAGGAGCCCGCGGCCGCCGGACAGAAAGAGAAGGAAGAGGCGCTGGAGGAGAAGCTGAGGGACTTAACTTTCCGGAAGCAGGTCTCTTACAG
Seq A exon
AATCTGCACCCCAAGAGCAAATAGTTCCTGTAGATGGTAAAGCTAAAGGTTTTAGCAGGCAATGCTACGAATCTG
Seq C2 exon
GAAAGCCATCTCCCGGACAGGCCTCCAGCATCTGGCACCTGCACATCCTCTTGGTCTTCCTGTGGCTAACGGTCCAGCGAAGGAGCCCAGAGCCACTCTGGACTGGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038665-'0-4,'0-0,1-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=0.641 A=0.000 C2=0.550
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGAGAAGGAAGAGGCGCT
R:
GAGTGGCTCTGGGCTCCTTC
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types