MmuEX6004968 @ mm9
Exon Skipping
Gene
ENSMUSG00000052861 | Dnahc6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:72971101-72974320:-
Coord C1 exon
chr6:72974248-72974320
Coord A exon
chr6:72972333-72972484
Coord C2 exon
chr6:72971101-72971323
Length
152 bp
Sequences
Splice sites
3' ss Seq
CCACCTTTTCATATCTCCAGGGA
3' ss Score
9.74
5' ss Seq
GAGGTATTG
5' ss Score
7.44
Exon sequences
Seq C1 exon
CTGTGGCTCAAACGAGGACAGCCTAAATCCTTCTGGATTTCGGGGTTCTTCTTCCCACAAGGATTTCTCACAG
Seq A exon
GGACCCTCCAGAACCACGCTAGAAAATATAATTTGCCTATAGACGAGCTGAGTTTCAAGTATAACATGATCCCAGTCTACCGAGACCAAGCTGCAGTGATAGAATCAGCCAAGGACATTCAATTTGGAACAGAACTGCCCATGGACAAGGAG
Seq C2 exon
TTGCCCTCTCCTGAAGATGGGGTTCTTGTTCATGGAATGTTCATGGATGCTTCTCGGTGGGATGATAAAGACATGGTCATAGAAGACGCATTGCCAGGACAGATGAACCCCATGCTGCCTGTAGTTCACTTTGAACCAAAACAAAACTATGAGCCAGTCCACACACTCTACCACTCCCCACTCTACAAAACAGGAGCCCGGGCAGGAACACTTTCAACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-'76-77,'76-76,77-77=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.027
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(3.2=100)
A:
PF0302810=Dynein_heavy=FE(6.7=100)
C2:
PF0302810=Dynein_heavy=FE(9.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGTTCTTCTTCCCACAAG
R:
TGGTTGAAAGTGTTCCTGCCC
Band lengths:
253-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: