MmuEX6007348 @ mm10
Exon Skipping
Gene
ENSMUSG00000053063 | Clec12a
Description
C-type lectin domain family 12, member a [Source:MGI Symbol;Acc:MGI:3040968]
Coordinates
chr6:129342691-129350511:+
Coord C1 exon
chr6:129342691-129342790
Coord A exon
chr6:129349713-129349858
Coord C2 exon
chr6:129350387-129350511
Length
146 bp
Sequences
Splice sites
3' ss Seq
TCCCACTTCCCCATTTTCAGGCC
3' ss Score
9.52
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
AAGCAACATCCCTCCATGGCCTCTGCGTCAGCTCCTGCTTTCTGACCTGCTTGAGGTTCCAGTCCTGACTTCCTTTGGTGATGAACAGCAGTATGGAAGT
Seq A exon
GCCTCAAGCTATGCACCACCTGTAGCCATCCAGTAGCCACTGAGAACTGGGTTAACCTGAAAGGGGGGCTGGGAATGAAAAGGACTATGGGCTGCAAGAAAAGGATGAAGCCAAGATCAAGGCAAAGTTTAATTCTGCAGCTCCAG
Seq C2 exon
GACATTTTCTGGAGCCTTCTTTGAATATTCATCAATGTCTGAAGAAATTGTTTATGCAAATCTCAAAATCCAGGACCCTGATAAAAAAGAAGAAACCCAGAAGTCTGACAAATGTGGGGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053063-'0-6,'0-3,1-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.631
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACATCCCTCCATGGCCTCT
R:
TCCCCCACATTTGTCAGACTTC
Band lengths:
218-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types