MmuEX6007368 @ mm10
Exon Skipping
Gene
ENSMUSG00000050241 | Klre1
Description
killer cell lectin-like receptor family E member 1 [Source:MGI Symbol;Acc:MGI:2662547]
Coordinates
chr6:129582392-129585827:+
Coord C1 exon
chr6:129582392-129582430
Coord A exon
chr6:129583089-129583234
Coord C2 exon
chr6:129585583-129585827
Length
146 bp
Sequences
Splice sites
3' ss Seq
GACAGGTGCTCCTTCTCTAGGGC
3' ss Score
7.24
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
CATCTTCTGAAAGATCATCTTCTACTATTCAGCAAGAAG
Seq A exon
GGCTCCATCATCCCTGTCCAGAGAACTGGGTCTGGTTCAGGTGCAGCTGTTATTTCTTCTCCAAGGAAGAGCTAATTTGGAGAGACAGTCAGCGTGCCTGCTTGTCTCTTAACTCCAGTCTCATAAGGATGAACAAAGAGGAAATG
Seq C2 exon
GTTTTCTAAACTTGAAGCTAATATGAAAAACTTCTGTGCATCTTATAAATCAAAAGAAGCTTATATGGAAGAAAACTGTGCGAACAAACTGACATATATTTGCAAGAAGTAGCATATTTAATTCTATGAGTTCATGAAATATATGAAAATTAATCTTTTTTAACATTTTTTCCTGGAGTGCTTATTTTATGAAGAAAATGTGACAAATATTTGCCTTTGCTTAAATAAAACTGTATTCAAATATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050241-'1-11,'1-8,6-11=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.357 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005916=Lectin_C=PU(26.8=53.1)
C2:
PF0005916=Lectin_C=PD(37.1=94.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCATCTTCTACTATTCAGCAAGA
R:
AGCAAAGGCAAATATTTGTCACA
Band lengths:
249-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types