MmuEX6008500 @ mm10
Exon Skipping
Gene
ENSMUSG00000078796 | Zfp541
Description
zinc finger protein 541 [Source:MGI Symbol;Acc:MGI:3647699]
Coordinates
chr7:16090360-16092361:+
Coord C1 exon
chr7:16090360-16090502
Coord A exon
chr7:16090808-16090911
Coord C2 exon
chr7:16092286-16092361
Length
104 bp
Sequences
Splice sites
3' ss Seq
CGGCTTTGCTGGGACCACAGTGA
3' ss Score
0.19
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ACATATCAACGTAGGAAGCAGATTTCAGGCGGAGATCCCAGAACTGCAGGAGAGGCTGCTGGCCAGAGTGGATGAGAATGTAGCTTCTCTGGTCTGGAAGCCATGGGGAGATGTGATGACCAACCCAGAGACCCAGGACAGAG
Seq A exon
TGATGGAGCTCTGCAATGTAGCATGCTCCAGTGTGATGCCAGGAGGGGGCACCAACCTGGAGCTTGCCCTGCACTGCCTGCATGATGCCCAGGGCAGTGTTCAG
Seq C2 exon
GTTGCCCTGGAGACTCTGTTACTCAGAGGACCCCAGAAGCCCCGGACTCACCCACTGGCTGACTATCGATACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078796-'18-25,'18-20,21-25=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.077
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PU(79.3=93.9)
A:
PF0144819=ELM2=PD(19.0=31.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATATCAACGTAGGAAGCAGAT
R:
TGTGTATCGATAGTCAGCCAGTG
Band lengths:
218-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types