MmuEX6008890 @ mm9
Exon Skipping
Gene
ENSMUSG00000047603 | Zfp235
Description
zinc finger protein 235 [Source:MGI Symbol;Acc:MGI:1929117]
Coordinates
chr7:24922065-24927285:+
Coord C1 exon
chr7:24922065-24922191
Coord A exon
chr7:24923312-24923521
Coord C2 exon
chr7:24925319-24927285
Length
210 bp
Sequences
Splice sites
3' ss Seq
AACACACTTCTTTCCCTTAGGCT
3' ss Score
9.2
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GAGGCAGTGACGTTCAGGGATGTGGCCGTAGTCTTCAGTGAAGAGGAGATGGGGCTGCTGGACGCTGCCCAGAGGAAGCTGTACCATGATGTGATGCTGGAGAACTTCCTGAACCTCCTGGCAGTGG
Seq A exon
GCTGGTTCCACTCCCTGTTAGCAGCTTTCCTCAGCAGGTATCCCACAGCTCTGGCACCTCTGACCTCTTGTGGTCTCCAAGGCAATCCAGGCTTCACCTCCCAAGCTTCACACAGTACAGGGATAGTCCGCCCACACGCCTGGCCTCTGAGGCTTTCATTAGCTGCAGGGAATTTCCACAGCCTCTTTCATGTGTCCTTGACTCAAACAG
Seq C2 exon
GAAGTCAGAGTCCAAACAAGGTGGACACTCTTGACTCAACAGGATTAAGGCACCTTTCACTGGGGTGGCTTCCATGCTGGCATATGACAGGCCATGATGTCAAGAAACTGGCCAGCACTCCAGATGTTGTAGTAAACATTCAAGGAAAGAGTTCTCACTTCCTGGAGCAATGTCACTCCTCCTGCCATGGCGGAACAGAAGAGCCTCTCCAGGTCTCCGAGGATAATGGCTGTCTGGAGAGTCTCACAAGCGATCATTCCAGCATTACCGAAAATCAGGAATTTCTGTCTGGGAGGGCTCAGAGTTCTTGGAGTAAAACAGACTTTAGTGAGAGATGGAACCATGAGAAACGCTGTACTCAGACTCTGGTGAAAACTAAGTCTCAGCTGTTGGCTCTGGGTGTTGACATTCTGAATTGCATTTCCCATCAAGATAACAATATACTGCATAAAAGAGACAAAGTCCCCAGCAGTGGTGACTGTGATCAAGTCATCTTCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047603-'3-10,'3-9,4-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.072
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF143691=zf-RING_3=WD(100=6.1),PF097235=Zn-ribbon_8=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.8),PF134511=zf-trcl=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGACGTTCAGGGATGTGG
R:
GCAGGAGGAGTGACATTGCTC
Band lengths:
308-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: