MmuEX6008893 @ mm9
Exon Skipping
Gene
ENSMUSG00000050605 | Zfp61
Description
zinc finger protein 61 [Source:MGI Symbol;Acc:MGI:99663]
Coordinates
chr7:25082592-25084694:-
Coord C1 exon
chr7:25084212-25084694
Coord A exon
chr7:25083293-25083394
Coord C2 exon
chr7:25082592-25082757
Length
102 bp
Sequences
Splice sites
3' ss Seq
AATTTTTGGTTTCCCTGCAGCCC
3' ss Score
9.28
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AGTGCTCGAGGACGCCACGAGAGAGCGACGGGTCCTCCGGAGCTGGAGCAACTACGGTTTTGAGCTCCGCAGTTAGTAGCGCTCTCCGCACCACGTCATCTCTCCAGCGCCAAAGCCTATACGTCCTAAGGCAGACATCCTCCAATGTAAAGACGTTGCTGTCCAAGACTTTCTTAGGGAGTATGGGAAATGAAAAACAACAGGGAAATCCAATACGGGAGGATGGTGCTCCTCCCCTAGCTTCGGGACCGGCCACCCGCGCCTCTGCATCCTCACTTCCGTTACCACTGAGGGAGCCGAGCGTCACGCACGGTTTCTCCACGCGGAATTCTGGGAACTCGTCGGCTTCAGGCTAGCCTGTAGCCATCTGTCCCCCTGGATTTGAGTTATTTTAGCCAGGAACCTCCAGAATGACCCGCTAGATGCTTCTGAGATCGACAGCAATTGCGTCTCGGGTGAAAAGGAAGGAGCGAGGTTTGAAAG
Seq A exon
CCCTGACTTCCCAAAAAGCAGTGCTGGAAGCCATAAGTGACTAAGATTGGCTGACGCTGGAGGATGTGTGGGTCGTACACCTGGGATTAACTTTTATTAGAG
Seq C2 exon
GGGTGGAAAACGTGAGTTGCGGTGTGGGTGTGGCGATTAGAAGACCACGCTGGGGAGATGCTGCCCATCTACCATCCTGTGTATCCTGAGGACCAAACTCGGGCTTGGTGGTAAAAGCTTTTATCCACCAAATCCTCCCTCGTGGACTTCGAGATTGCCTAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050605-'1-6,'1-5,2-6=AN
Average complexity
A_S
Mappability confidence:
83%=100=75%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTCTCCACGCGGAATTCT
R:
AGGATGGTAGATGGGCAGCAT
Band lengths:
250-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: