MmuEX6009189 @ mm9
Exon Skipping
Gene
ENSMUSG00000049685 | Cyp2g1
Description
cytochrome P450, family 2, subfamily g, polypeptide 1 [Source:MGI Symbol;Acc:MGI:109612]
Coordinates
chr7:27599150-27601704:+
Coord C1 exon
chr7:27599150-27599310
Coord A exon
chr7:27599644-27599820
Coord C2 exon
chr7:27601563-27601704
Length
177 bp
Sequences
Splice sites
3' ss Seq
CCTTTACCTCTGCCCTGCAGTTA
3' ss Score
7.91
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GAGCTCCCATAGATCCCACCTTATACCTGAGCCGCACTGTGTCCAACGTCATCTGTTCCGTGGTCTTCGGAAAACGCTTCGACTATCAGGACCAGCGTTTCCAGAGCCTCATGAGGATGATCAATGAGAGCTTTGTGGAGATGAGCAAGCCCTGGGCACAG
Seq A exon
TTATATGATATGTACTGGAAAGTCATGCAGTATTTTCCAGGAAGACACAACTACCTCTACAACTTGATAGAAGACCTTAAGGACTTCATTGCATCCAGGGTCAAAATCAATGAAGCATCCTTTGACCCCTCAAACCCTAGGGACTTCATAGATTGCTTTCTCATCAAGATGCACCAG
Seq C2 exon
GATAAAAGTGACCCGCACACAGAATTCAACCTCAAGAACTTGGTTCTCACCACCCTCAACCTCTTCTTTGCTGGCACAGAAACTGTGAGTTCCACGTTACGGTATGGATTCTTGCTGCTGCTGAAGTACCCCGAGGTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049685-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
PF0006717=p450=FE(12.7=100)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGTGTCCAACGTCATCT
R:
GGTACTTCAGCAGCAGCAAGA
Band lengths:
258-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: