MmuEX6009207 @ mm9
Exon Skipping
Gene
ENSMUSG00000078787 | Cyp2t4
Description
cytochrome P450, family 2, subfamily t, polypeptide 4 [Source:MGI Symbol;Acc:MGI:2686296]
Coordinates
chr7:27938733-27940814:+
Coord C1 exon
chr7:27938733-27938751
Coord A exon
chr7:27940135-27940322
Coord C2 exon
chr7:27940652-27940814
Length
188 bp
Sequences
Splice sites
3' ss Seq
CCGCACATTGAGGATCTTAGACA
3' ss Score
-4.74
5' ss Seq
GAGGTAGCT
5' ss Score
5.82
Exon sequences
Seq C1 exon
ATGGAAAGAGCCAGGCACG
Seq A exon
ACAGGATGGTCACCTGCTTGGCGTTGCTGCTGCTGCTGCTGATTCTAATGCTGTTGCTTTGGTGGGGTGGGGTGGTCCGCCGCCAAGCTCAGATGCAGAAAGACTTACCCCCAGGGCCCGCACCTCTCCCGTTGCTGGGGAACTTGCTACAACTACAGTCTGGAGACTTGGACCGTGTGCTCATGGAG
Seq C2 exon
CTCTCCAGCCACTGGGGCCCAGTGTTCACTGTATGGCTGGGCCCGCTCCCTGCAGTGGTGCTGTGCGGCTATGAGGCGCTCCGAGATGCATTAGTACTGCAAGCAGATGCGTTCTCCGGCCGCGGGGCCATGGCTGTCTTCGATCGCTTCACCTGCGGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078787-'0-2,'0-1,1-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006717=p450=PU(5.7=41.3)
C2:
PF0006717=p450=FE(11.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAAAGAGCCAGGCACG
R:
CAGGTGAAGCGATCGAAGACA
Band lengths:
174-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: