MmuEX6009674 @ mm9
Exon Skipping
Gene
ENSMUSG00000046185 | Zfp84
Description
zinc finger protein 84 [Source:MGI Symbol;Acc:MGI:107780]
Coordinates
chr7:30556358-30561010:+
Coord C1 exon
chr7:30556358-30556422
Coord A exon
chr7:30560357-30560483
Coord C2 exon
chr7:30560924-30561010
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACCTCATGCGTTCATTTCAGGAG
3' ss Score
9.45
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
TTTGTCCAGAGTGCCCGGAAGAGCTGAGAAGCATGGCCGTTGTGGACGTCAGCACCGTGTTTAAG
Seq A exon
GAGTTGGTGGTGTTCAGGGACGTGGCTGTGGAGTTCTGTAAGGAGGAGTGGGAGTGTCTGGGCCCTGAGCAGAGGTCGCTATACAGAGATGTGATGCTGGAGAACTACAGCAACTTTGTGTCGCTGG
Seq C2 exon
GACTTGCCATTTCTAAGCCATCAATAATTTCACTGCTGGAGCAAGGCAAAGAGCCCTGGATAGTGGAGCAAGCAGGATGGTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046185-'1-3,'1-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTCCAGAGTGCCCGGAAG
R:
ACCATCCTGCTTGCTCCACTA
Band lengths:
146-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: