MmuEX6011768 @ mm10
Exon Skipping
Gene
ENSMUSG00000030539 | Sema4b
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B [Source:MGI Symbol;Acc:MGI:107559]
Coordinates
chr7:80218883-80220331:+
Coord C1 exon
chr7:80218883-80219064
Coord A exon
chr7:80219186-80219336
Coord C2 exon
chr7:80220121-80220331
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTTGGCTGTTTCCTTTGCAGGCA
3' ss Score
12.12
5' ss Seq
GCGGTAGGT
5' ss Score
9
Exon sequences
Seq C1 exon
GGCGATGAGGGTGGAGAGCGGGTGTTGCAGCAACGCTGGACCTCCTTTCTCAAGGCTCAGCTCCTGTGCTCCCGGCCTGATGATGGCTTTCCCTTTAACGTGCTACAAGATGTCTTCACCCTGAACCCCAACCCTCAGGATTGGCGCAAGACCCTTTTCTATGGGGTCTTTACCTCCCAGTG
Seq A exon
GCACAGAGGGACCACAGAAGGCTCTGCCATCTGCGTCTTCACCATGAATGATGTGCAGAAGGCCTTTGACGGCCTGTACAAGAAAGTAAACAGAGAGACACAGCAGTGGTATACCGAGACCCACCAGGTGCCCACACCGCGGCCGGGAGCG
Seq C2 exon
TGCATTACCAACAGTGCCCGGGAACGGAAGATCAACTCGTCCCTGCAGCTCCCAGACCGAGTGCTGAACTTCCTCAAGGATCACTTCTTGATGGATGGGCAGGTCCGCAGTCGCCTGCTGCTGCTGCAGCCCAGAGCCCGCTACCAGCGTGTGGCTGTGCACCGTGTGCCTGGCCTGCACAGCACTTATGATGTCCTATTTCTGGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030539-'12-22,'12-18,22-22=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.176 C2=0.056
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(13.7=100)
A:
PF0140314=Sema=FE(11.4=100)
C2:
PF0140314=Sema=FE(16.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACCCCAACCCTCAGGATT
R:
ATCATAAGTGCTGTGCAGGCC
Band lengths:
253-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types