MmuEX6013718 @ mm10
Exon Skipping
Gene
ENSMUSG00000054746 | Abca15
Description
ATP-binding cassette, sub-family A (ABC1), member 15 [Source:MGI Symbol;Acc:MGI:2388709]
Coordinates
chr7:120388097-120396724:+
Coord C1 exon
chr7:120388097-120388270
Coord A exon
chr7:120394337-120394515
Coord C2 exon
chr7:120396599-120396724
Length
179 bp
Sequences
Splice sites
3' ss Seq
TTTCTGCCTTCCATCCTCAGACA
3' ss Score
11.05
5' ss Seq
CCGGTAAAT
5' ss Score
6.89
Exon sequences
Seq C1 exon
GGATATCAACCATCATGTCCAACTCCACCCAAACCTTCCTGCTCAATGCGCTGCTGCTCTTTCCTATGTACAACCTTGGGAAGTGTATCAGTGAGTATACTGTTATTTACCGGAAGAAGATGCTATGCATCCAGCAAAAGAACGCTCTCAAATACCTGAATTGTAGCAACAAAC
Seq A exon
ACACTAAGAAGAACATTTATTCTTTGAAGAAACCTATGCTGGGAAAGTATTTAATTGCTATGAGCATCGCCGGCTTTGTTTTCCTTCTTTTGATTTTCTTTTGGGAAAATATCTCCTGGAAAGTAAAAATGTTTATCCATCAACACATTTACTTTGGTGCCTGCAAGAAATACAAGCCG
Seq C2 exon
GATATAATTTCTAAGGAATTATCTGGGACTTCTGAAGATAATGATGTAGAAAATGAGAGAAGAGAAATTTTGTACCAGCCTGAAAAGTTTCTGAATTGCCCAGTTCTTATTAAGGAGCTCACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054746-'15-35,'15-25,26-35=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(14.4=100)
A:
PF126982=ABC2_membrane_3=PD(8.2=55.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACTCCACCCAAACCTTCC
R:
TCAGAAACTTTTCAGGCTGGT
Band lengths:
250-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types