MmuEX6014399 @ mm9
Exon Skipping
Gene
ENSMUSG00000049728 | Zfp668
Description
zinc finger protein 668 [Source:MGI Symbol;Acc:MGI:2442943]
Coordinates
chr7:135011270-135019160:-
Coord C1 exon
chr7:135018791-135019160
Coord A exon
chr7:135018191-135018272
Coord C2 exon
chr7:135011270-135011938
Length
82 bp
Sequences
Splice sites
3' ss Seq
ACTCTCACAAACTCCTACAGTGG
3' ss Score
4.09
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
CTTTGTCCTGCTCTGAATCCTCCGTCCATTCATTTCTTCATGCCTTCCTTCTTCATTCATTCTGCCCTGTTCCGCTCGCCGAAGCTACGTTATCCTAGGGTTTAGTCCCAAATGAGTCAGCATACAGCCCCGCTCTGCGGGGGCTGCCTGTCTGGCGAGGACACCCGCACAAACACGGTTGCAGAGAGCGAGGAGCGCTGGGTTTCTGCAGGTCTTGTCCCTCCTCAGAGAGTCTGGTAGGCCCTACTGCCCTGCAAACTCCCGTATGCTGTTCCACTATTCCACTGAAGAAATTGAGTCCCCGAGCGCGATGCATCCCTCATCTTACAGCTCGTTATTATTTTTGTGGGGAATGGAGTATTGGAAGCAT
Seq A exon
TGGAAGAGGCAGAGGCTATAGACCTGGGTGTGAATTCCACCAGAAGTTTGCTCTCAGTCACCAAACAGTTTTGGAGTAACAG
Seq C2 exon
AGAAGGCCTACTCACCAAGGCCATGGAAGTGGAGGCTACAGAGGCCAGGTCCCCAGGCCCCTGCTACAAGCGCTCTGGCCGCCGTTATAAGTGCCTGTTTTGTACAAAGACATTTCCAAATGCACCCAGGGCAGCCCGCCATGCTGCTACACATACACCCACAGACTGCACAGAGGAGGTGAGGGAGGCCCAGCCAAAAGTGGATACAGAGCCCAAGGCGGAGGAAGCCAGCGGAGACAAGGTATCAGCTTCAGTAGCCAAGCCCCGGCCCTATGCCTGCCCACTGTGCCCCAAGGCCTACAAGACAGCTCCTGAGCTACGCAGCCATGGGCGCAGCCACACTGGTGAGAAACCCTTCCCGTGCCCAGAGTGTGGCCGCCGCTTCATGCAGCCAGTGTGCCTGCGTGTGCACCTGGCCTCACATGCCGGTGAGCTGCCCTTCCGATGCACACACTGCCCCAAGGCTTATGGTACACTCTCTAAACTAAAGATCCACCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049728-'3-5,'3-2,4-5=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.292
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=11.6),PF134651=zf-H2C2_2=WD(100=11.1),PF134651=zf-H2C2_2=WD(100=11.6),PF134651=zf-H2C2_2=WD(100=12.0),PF134651=zf-H2C2_2=WD(100=12.0),PF134651=zf-H2C2_2=PU(23.1=2.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGAGAGTCTGGTAGGCCC
R:
CACTTCCATGGCCTTGGTGAG
Band lengths:
178-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: