MmuEX6015036 @ mm10
Exon Skipping
Gene
ENSMUSG00000025461 | Cd163l1
Description
CD163 molecule-like 1 [Source:MGI Symbol;Acc:MGI:2443796]
Coordinates
chr7:140223891-140228174:+
Coord C1 exon
chr7:140223891-140224637
Coord A exon
chr7:140224710-140225024
Coord C2 exon
chr7:140227857-140228174
Length
315 bp
Sequences
Splice sites
3' ss Seq
GTGACCTGGTCTCTCTGCAGGGA
3' ss Score
10.43
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
AAGCACCCTGGGGGCCCATGGTTGTGTCCTGGGGAATACAGCTTCTACCATCTGTTCAGGTGAGTAACAGGGAGCAGTAGGATCGTGGAGAGGAAGGTCAGTAGGGGTGGTGGGCAGTGGCTGAGAGTGGGTGGGGTTGTCCCATGTGGTAGTCTTCTTCCTCTTGAGTCTGTTCCTGCCAGGACTCCAAGACATCCTGCGGCTGAGAGATGGACAGAGCTACTGTGATGGCCGTGTAGAGATTTCCCTGGATGGTTCATGGGGCCGCGTATTGGATGACGCCTGGGACCTGCATGGCGCCAGCGTGGTGTGCCGGCAGCTAGGGTGTGGAGAGGCACAGCGAGCCTATGATGCTCCAGCTCCTATTTTCAGGAGAGTCCCTGTGGGGCTGAGCCAGGTGCGCTGCCTGGGCTCTGAGACTCGCCTGGTGCATTGCAATGTTTCTACGTCCCTGCTGGTGCCTGCTGGGACCTTGCGTGACGCAGGAGTGGTGTGCTCCG
Seq A exon
GGAGCCTGCGCGTGAGGCTGGCTGCGGGCCCAGGTCGATGTGCTGGGCGTGTGGAGTTATTCTATCAGGGCTCCTGGGGCACTGTGTGTGATGATGCCTGGGACCTACAGGATGCACAAGTGGTCTGTAGGCAGCTGGACTGTGGCCACGCCCTCAGTGCTCCCCGGAATGCTCACTTTGGGGCGGGGACTGGGCACATCTGGATGGATGAGCTGCACTGCTTGGGAAATGAGTCTTCGTTGTGGAAGTGCCAGTCAGGAAGCTGGGGCCAACATGACTGCAGACACAAGGAGGATGCTGGAGTGTTCTGCTCAG
Seq C2 exon
AATCTGTGGCTCTGAGGCTTCGAGGTGGCACTAGTGGCTGCGTTGGATGGCTGGACGTGCTCTACAATGGGTCCTGGGGTGCTGTGTGCAGCAATGCACTCAGAGACATCTCCTTGAGCATCATCTGCAGACAGCTGGGATGTGGGGACCAGGGCTGGCTGGAGAACAGGCCTTCTTCTGGAGCTGGCCTGGGAATCTCCTGGGTGGATAATATCAAGTGTCGAAATCTACACAATGCCACCCTGTGGCAATGCCCTTCTGCCCCATGGAACCCGCACTCCTGCACCCAGGAGGAGGAGGTCTGGATTAACTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025461-'1-16,'1-5,9-16=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=95.1)
A:
PF0053013=SRCR=WD(100=92.5)
C2:
PF0053013=SRCR=WD(100=92.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCGTGTAGAGATTTCCCT
R:
ACCCCAGGACCCATTGTAGAG
Band lengths:
352-667
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types