MmuEX6018493 @ mm9
Exon Skipping
Gene
ENSMUSG00000054537 | Tmprss11e
Description
transmembrane protease, serine 11e [Source:MGI Symbol;Acc:MGI:3513175]
Coordinates
chr5:87138368-87144703:-
Coord C1 exon
chr5:87144523-87144703
Coord A exon
chr5:87142744-87143003
Coord C2 exon
chr5:87138368-87138510
Length
260 bp
Sequences
Splice sites
3' ss Seq
TATTTATTTGTTTTTGGTAGACA
3' ss Score
5.52
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GTTGTGGGACACGACGGAACAAATCTACAGTACAGACTAGTGTGAGGATTGTTGGAGGGACACCAGTAGAAGAGGAAGAGTGGCCATGGCAAAGCAGCCTGCGGTGGGATGGGTCCCACCGCTGTGGAGCAACTTTGATCAACAACACATGGCTTGTGACTGCTGCTCACTGCTTTCGAAC
Seq A exon
ACACAAGGACCCATCCAGATGGAGTGCTACCTTTGGGGCAACATTACAACCTCGAAAACTGACGACAGGCATCCGGAGGATAATTGTTCATGAAAAATACAAATACCCGTCCCATGACTATGACATTGCACTGGCAGAACTGTCTAAGCCGGTCCCCTGCACAAATGCAGTGCATAAGGTTTGTCTCCCAGATGCAAACCATGAGTTTCAGCCGGGGCAGAGGATGTTTGTGACAGGATTTGGAGCATTGAAAAATGATG
Seq C2 exon
GTTTCACCCAGAATAACCTTCGGCAAGTACAGGTGGACTACATAGATACCCAGACCTGCAATCAGCCTCAATCTTACAACGGAGCCATCACTCCTAGGATGTTGTGCGCTGGCTTCTTAAAAGGAGAAAAAGATGCGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054537-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=0.011 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.5=72.1)
A:
PF0008921=Trypsin=FE(38.5=100)
C2:
PF0008921=Trypsin=FE(20.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACACGACGGAACAAATC
R:
TTAAGAAGCCAGCGCACAACA
Band lengths:
297-557
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: