MmuEX6020433 @ mm9
Exon Skipping
Gene
ENSMUSG00000029602 | Rasal1
Description
RAS protein activator like 1 (GAP1 like) [Source:MGI Symbol;Acc:MGI:1330842]
Coordinates
chr5:121104815-121109641:+
Coord C1 exon
chr5:121104815-121104928
Coord A exon
chr5:121105077-121105138
Coord C2 exon
chr5:121109512-121109641
Length
62 bp
Sequences
Splice sites
3' ss Seq
CTCCTACCACCATCCTGCAGACA
3' ss Score
8.03
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GACAGCAACCATCTGGAGGAGCCTGAGCCCCTTTTGGGGGGAGGAGTACACCGTTCACCTTCCATTGGACTTCCACCACCTGGCCTTCTACGTGCTGGATGAGGACACCGTTGG
Seq A exon
ACACGATGACATCATTGGGAAGATCTCATTGAGCAAAGAGGCGATCACAGCCGACCCTCGAG
Seq C2 exon
GGATCGACAGCTGGATCAACCTGAGCCGAGTGGATCCAGACGCTGAAGTACAGGGTGAGGTCTGCCTGGATGTGAAGCTATTGGAGGATGCTCGGGGCCGCTGCCTCCGCTGCCACGTGAGACAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029602-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(46.3=100)
A:
PF0016825=C2=PD(11.0=40.9)
C2:
PF0016825=C2=PU(9.8=18.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCATCTGGAGGAGCCTGAG
R:
GCTCAGGTTGATCCAGCTGTC
Band lengths:
134-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: