MmuEX6021786 @ mm9
Exon Skipping
Gene
ENSMUSG00000079173 | Zan
Description
zonadhesin [Source:MGI Symbol;Acc:MGI:106656]
Coordinates
chr5:137913320-137915439:-
Coord C1 exon
chr5:137915168-137915439
Coord A exon
chr5:137914751-137914838
Coord C2 exon
chr5:137913320-137913472
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTTTGTCCCTAATTCCGCAGCTG
3' ss Score
9.51
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
AGGGGTATTACCTGCACATGGATCCCAAGACCTTCCCTCAGGGCGGAGTGGCACGCCTGCGTAGCCCTGACATATGGGAGCAAGGCCCCCTTTGCGTCCATTTTGCTTTCCACATGTTCGGGCTGTCATGGGGCGCCCAGCTCAGACTGCTGCTGCTCAGGGGCCGGAAGCACCTCCGGCCCTATGTACTCTGGAAACATGTGAACACCCAGAGTCCCTCTTGGATGCCCACCACTGTCACTGTACCAGCAGATCATGATATACCAAGCTGG
Seq A exon
CTGATGTTTGAAGGCATGAGAGGAAACACCGCCTACCTGGACATCTCTTTGGATGGCCTCTCTATCCAGCGGGGTACCTGCAATCAGG
Seq C2 exon
TCTGCATGTCCCAGATGTGCACCTTTGATACTCTAAATGATCTCTGCGGCTGGAGCTGGGTCCCAACTGCCACTGGGGCTAAGTGGACCCAGAAGAAGGGACCAACAGGGAAGCAGGGTGTGGGGCCTGCTGAAGACTTCTCTAACCCTGGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079173-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=0.000 C2=0.327
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(54.9=100)
A:
PF0062918=MAM=PD(17.1=93.3)
C2:
PF0062918=MAM=PU(28.5=86.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACACCCAGAGTCCCTCT
R:
TGTTGGTCCCTTCTTCTGGGT
Band lengths:
179-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: