MmuEX6031526 @ mm9
Exon Skipping
Gene
ENSMUSG00000043789 | Vwce
Description
von Willebrand factor C and EGF domains [Source:MGI Symbol;Acc:MGI:1919018]
Coordinates
chr19:10731100-10734001:+
Coord C1 exon
chr19:10731100-10731196
Coord A exon
chr19:10732490-10732572
Coord C2 exon
chr19:10733911-10734001
Length
83 bp
Sequences
Splice sites
3' ss Seq
CCACATGCTCTGTTTGGCAGGCT
3' ss Score
6.03
5' ss Seq
CTGGTATGC
5' ss Score
6.73
Exon sequences
Seq C1 exon
GCAGACGGCTCTGTGAGCTGCAAGAGGACAGACTGCGTGGACTCTTGCCCGCACCCCATCCGGATTCCTGGACAGTGCTGTCCTGACTGTTCAGCAG
Seq A exon
GCTGCACCTACACAGGTAGAATCTTCTACAACAACGAAACGTTCCCGTCAGTGCTCGACCCCTGTCTGAGCTGCATCTGCCTG
Seq C2 exon
CTGGGCTCAGTGGCCTGTTCACCTGTGGACTGTCCCATCACCTGTACCTACCCCTTCCACCCGGATGGCGAGTGCTGCCCTGTATGCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043789-'17-17,'17-16,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(50.0=87.9)
A:
PF0009313=VWC=PU(46.4=92.9)
C2:
PF0009313=VWC=PD(50.0=90.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGAGCTGCAAGAGGACAG
R:
CATACAGGGCAGCACTCGC
Band lengths:
173-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: