MmuEX6031531 @ mm10
Exon Skipping
Gene
ENSMUSG00000043789 | Vwce
Description
von Willebrand factor C and EGF domains [Source:MGI Symbol;Acc:MGI:1919018]
Coordinates
chr19:10646534-10648508:+
Coord C1 exon
chr19:10646534-10646952
Coord A exon
chr19:10647032-10647125
Coord C2 exon
chr19:10648426-10648508
Length
94 bp
Sequences
Splice sites
3' ss Seq
ACTCCTGTTTGTGCATTCAGGAT
3' ss Score
9.13
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CTTTCCCGAAGGCCGTTCTGGCCCCATCTGCCATCCTGCAGCCCCGACAGCATCCTGCTAAGATGTCCCTGCTCCTCCCTGAGGCAGGCCGGCCTGCCCTGTCCCCAGGACACAGCCCTCCTCCAGGGGCCCCAGGATACCCCACTGGAGTTAGAACAATCAGTCAGCCATCTACCACCCAGGTCCTACCCACATTCTTTCCCACACAGTTGATATCCACTCCAGTGCCAAGTTCCTCCCCACTGGGGACCCTTGGACCCCCCTCACTCCTCCAGGGGGCTGTAGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAAAGCTGGGAGCAGGGTCCTCTTCCTGTTGGCACCTGGGAGCCACGTATGAATCAGGCAGCCGCTGGAACCAGCCCGGATGTTCTCAGTGCTTGTGCCAG
Seq A exon
GATGGAGAGGTGACCTGTGGAGGAGTAAGGTGTGACGCTACCTGTTCCCACCCAGTTCCCCCGAGAGATGGGGGGTGCTGCCCCTCTTGCACTG
Seq C2 exon
GCTGCTTTCACAGTGGCGCTATCCGAGCCGAAGGGGATGTGTTTTCACCTCCTGAGGAGAACTGTACTGTGTGTGTCTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043789-'10-13,'10-11,11-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.589 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(43.6=17.1)
A:
PF0009313=VWC=PD(52.7=90.6)
C2:
PF0009313=VWC=PU(47.3=92.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCTCACCTAGGGGTCCTG
R:
AAAACACATCCCCTTCGGCTC
Band lengths:
173-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types