MmuEX6031533 @ mm10
Exon Skipping
Gene
ENSMUSG00000043789 | Vwce
Description
von Willebrand factor C and EGF domains [Source:MGI Symbol;Acc:MGI:1919018]
Coordinates
chr19:10644147-10646952:+
Coord C1 exon
chr19:10644147-10644263
Coord A exon
chr19:10644994-10645122
Coord C2 exon
chr19:10646534-10646952
Length
129 bp
Sequences
Splice sites
3' ss Seq
GCAGCAAGGCTCTCCCACAGATG
3' ss Score
1.54
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ACACTGACGAGTGCCTGGGAACACCCTGCCAGCAGAGATGTAAGAACAGCATTGGTAGCTATAAGTGCTCCTGCCGCGCTGGCTTCCACCTCCACGGCAACCGACACTCCTGTATAG
Seq A exon
ATGTCAACGAGTGTCGGCGGCCACAAGAGAGGAGAGTCTGTCACCACACCTGCCACAACACTGTGGGCAGCTTCCTGTGCACCTGTAGACCTGGTTTCAGGCTTCGATCTGACCGTGTGTCCTGTGAAG
Seq C2 exon
CTTTCCCGAAGGCCGTTCTGGCCCCATCTGCCATCCTGCAGCCCCGACAGCATCCTGCTAAGATGTCCCTGCTCCTCCCTGAGGCAGGCCGGCCTGCCCTGTCCCCAGGACACAGCCCTCCTCCAGGGGCCCCAGGATACCCCACTGGAGTTAGAACAATCAGTCAGCCATCTACCACCCAGGTCCTACCCACATTCTTTCCCACACAGTTGATATCCACTCCAGTGCCAAGTTCCTCCCCACTGGGGACCCTTGGACCCCCCTCACTCCTCCAGGGGGCTGTAGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAAAGCTGGGAGCAGGGTCCTCTTCCTGTTGGCACCTGGGAGCCACGTATGAATCAGGCAGCCGCTGGAACCAGCCCGGATGTTCTCAGTGCTTGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043789-'1-20,'1-9,9-20=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.589
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.5)
C2:
PF0009313=VWC=PU(43.6=17.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTGCCAGCAGAGATGTAA
R:
AACTCCAGTGGGGTATCCTGG
Band lengths:
247-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types