MmuEX6033072 @ mm9
Exon Skipping
Gene
ENSMUSG00000025197 | Cyp2c44
Description
cytochrome P450, family 2, subfamily c, polypeptide 44 [Source:MGI Symbol;Acc:MGI:1888897]
Coordinates
chr19:44091226-44103737:-
Coord C1 exon
chr19:44103498-44103737
Coord A exon
chr19:44096052-44096214
Coord C2 exon
chr19:44091226-44091375
Length
163 bp
Sequences
Splice sites
3' ss Seq
CTGCTTCTGTCTCCTGCCAGCTG
3' ss Score
11.16
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
ATTATTGGGGCTTAAGCTTTGCTCACAACAGGCAGCTTCAGTTAACATCCCGGGGCTGACATGGAGCTGCTGGGTCTCCCTACGCTTGCTCTCCTGGTTTTGGTGATGTCCCTCAGCCTCCTTTCAGTGTGGACAAAAATGCGCACTGGGGGGAGACTGCCCCCTGGCCCCACTCCACTTCCCATTATTGGGAATATACTGCAATTGGACCTCAAAGACATCCCTGCATCGCTTTCCAAG
Seq A exon
CTGGCCAAAGAGTATGGGCCTGTTTACACTCTGTACTTTGGATCCTGGCCTACCGTGGTCCTACATGGCTATGATGTGGTGAAGGAAGCGCTACTCAATCAAGGTGATGAGTTCCTTGGGAGAGGACCTCTGCCCATTATCGAAGATAGCCAGAAGGGACATG
Seq C2 exon
GAATTGTTTTCAGTGAAGGAGAGAGGTGGAAACTCCTGCGACGCTTCTCCCTCATGACGCTGAAGAACTTCGGAATGGGGAAGAGAAGCCTAGAGGAGAGGGTGCAGGAGGAAGCCCGGTGCCTCGTGGAGGAGTTACATAAAACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025197-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=43.3)
A:
PF0006717=p450=FE(11.8=100)
C2:
PF0006717=p450=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCCCTCAGCCTCCTTTCA
R:
CTCCTGCACCCTCTCCTCTAG
Band lengths:
245-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: