MmuEX6034804 @ mm10
Exon Skipping
Gene
ENSMUSG00000031481 | Tpte
Description
transmembrane phosphatase with tensin homology [Source:MGI Symbol;Acc:MGI:2446460]
Coordinates
chr8:22345819-22349387:+
Coord C1 exon
chr8:22345819-22345900
Coord A exon
chr8:22346021-22346109
Coord C2 exon
chr8:22349326-22349387
Length
89 bp
Sequences
Splice sites
3' ss Seq
AATCTTATATTTGAAATCAGGGA
3' ss Score
3.92
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GTGAGAGAGCTTATGACCCTAAGCACTTCCACTACAGGGTCCGCAGAATCATGATTGATGATCATAATGTCCCCACTCTTGA
Seq A exon
GGAAATGTTGTTGTTCTCCAAGGAAGTAAATAATTGGATGGCTCAAGATCCTGAAAATGTTGTCGCGATTCACTGTAAGGGAGGAAAAG
Seq C2 exon
GAAGAACTGGAACCATGGTGTGTGCCTGCCTCATTGCCAGTGAAATAGTTTTAAATGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031481-'23-21,'23-20,27-21=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF145661=PTPlike_phytase=FE(18.4=100)
A:
PF145661=PTPlike_phytase=FE(20.4=100)
C2:
PF145661=PTPlike_phytase=PD(8.2=57.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGAGAGCTTATGACCCTAAGC
R:
TTTGCATTTAAAACTATTTCACTGGC
Band lengths:
143-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types