MmuEX6034813 @ mm10
Exon Skipping
Gene
ENSMUSG00000031481 | Tpte
Description
transmembrane phosphatase with tensin homology [Source:MGI Symbol;Acc:MGI:2446460]
Coordinates
chr8:22316279-22320921:+
Coord C1 exon
chr8:22316279-22316329
Coord A exon
chr8:22318327-22318377
Coord C2 exon
chr8:22320856-22320921
Length
51 bp
Sequences
Splice sites
3' ss Seq
GTTTTCACAAACTCCCTTAGCTC
3' ss Score
3.98
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
CAAAATCCCAAGTACACTGCAAACGCAGACGTCCATGTCCACCAACACTCT
Seq A exon
CTCCTTATCTGATTTATCATCAGATTACCAGGAAGAGCAAATGAACAAATG
Seq C2 exon
CAAGTTAAACCAGATGTCCAAGTTGTACGACGATGATGAACGTACTGATATTCAAAAGTCATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031481-'15-11,'15-10,16-11
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAAGTACACTGCAAACGC
R:
ATGACTTTTGAATATCAGTACGTTCA
Band lengths:
108-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types